# Licensed under a 3-clause BSD style license - see LICENSE.rst """Tests for physical functions.""" # pylint: disable=no-member, invalid-name import pytest import numpy as np from astropy.modeling.physical_models import BlackBody, NFW from astropy.modeling.fitting import LevMarLSQFitter from astropy.tests.helper import assert_quantity_allclose from astropy import units as u from astropy.utils.exceptions import AstropyUserWarning from astropy import cosmology from astropy.utils.compat.optional_deps import HAS_SCIPY # noqa __doctest_skip__ = ["*"] # BlackBody tests @pytest.mark.parametrize("temperature", (3000 * u.K, 2726.85 * u.deg_C)) def test_blackbody_evaluate(temperature): b = BlackBody(temperature=temperature, scale=1.0) assert_quantity_allclose(b(1.4 * u.micron), 486787299458.15656 * u.MJy / u.sr) assert_quantity_allclose(b(214.13747 * u.THz), 486787299458.15656 * u.MJy / u.sr) def test_blackbody_weins_law(): b = BlackBody(293.0 * u.K) assert_quantity_allclose(b.lambda_max, 9.890006672986939 * u.micron) assert_quantity_allclose(b.nu_max, 17.22525080856469 * u.THz) def test_blackbody_sefanboltzman_law(): b = BlackBody(293.0 * u.K) assert_quantity_allclose(b.bolometric_flux, 133.02471751812573 * u.W / (u.m * u.m)) def test_blackbody_input_units(): SLAM = u.erg / (u.cm ** 2 * u.s * u.AA * u.sr) SNU = u.erg / (u.cm ** 2 * u.s * u.Hz * u.sr) b_lam = BlackBody(3000*u.K, scale=1*SLAM) assert(b_lam.input_units['x'] == u.AA) b_nu = BlackBody(3000*u.K, scale=1*SNU) assert(b_nu.input_units['x'] == u.Hz) def test_blackbody_return_units(): # return of evaluate has no units when temperature has no units b = BlackBody(1000.0 * u.K, scale=1.0) assert not isinstance(b.evaluate(1.0 * u.micron, 1000.0, 1.0), u.Quantity) # return has "standard" units when scale has no units b = BlackBody(1000.0 * u.K, scale=1.0) assert isinstance(b(1.0 * u.micron), u.Quantity) assert b(1.0 * u.micron).unit == u.erg / (u.cm ** 2 * u.s * u.Hz * u.sr) # return has scale units when scale has units b = BlackBody(1000.0 * u.K, scale=1.0 * u.MJy / u.sr) assert isinstance(b(1.0 * u.micron), u.Quantity) assert b(1.0 * u.micron).unit == u.MJy / u.sr # scale has units but evaluate scale has no units assert_quantity_allclose(b.evaluate(1.0 * u.micron, 1000.0 * u.K, 4.0), 89668184.86321202 * u.MJy / u.sr) @pytest.mark.skipif("not HAS_SCIPY") def test_blackbody_fit(): fitter = LevMarLSQFitter() b = BlackBody(3000 * u.K, scale=5e-17 * u.Jy / u.sr) wav = np.array([0.5, 5, 10]) * u.micron fnu = np.array([1, 10, 5]) * u.Jy / u.sr b_fit = fitter(b, wav, fnu, maxiter=1000) assert_quantity_allclose(b_fit.temperature, 2840.7438355865065 * u.K) assert_quantity_allclose(b_fit.scale, 5.803783292762381e-17) def test_blackbody_overflow(): """Test Planck function with overflow.""" photlam = u.photon / (u.cm ** 2 * u.s * u.AA) wave = [0.0, 1000.0, 100000.0, 1e55] # Angstrom temp = 10000.0 # Kelvin bb = BlackBody(temperature=temp * u.K, scale=1.0) with pytest.warns( AstropyUserWarning, match=r'Input contains invalid wavelength/frequency value\(s\)'): with np.errstate(all="ignore"): bb_lam = bb(wave) * u.sr flux = bb_lam.to(photlam, u.spectral_density(wave * u.AA)) / u.sr # First element is NaN, last element is very small, others normal assert np.isnan(flux[0]) with np.errstate(all="ignore"): assert np.log10(flux[-1].value) < -134 np.testing.assert_allclose( flux.value[1:-1], [0.00046368, 0.04636773], rtol=1e-3 ) # 0.1% accuracy in PHOTLAM/sr with np.errstate(all="ignore"): flux = bb(1.0 * u.AA) assert flux.value == 0 def test_blackbody_exceptions_and_warnings(): """Test exceptions.""" # Negative temperature with pytest.raises( ValueError, match="Temperature should be positive: \\[-100.\\] K"): bb = BlackBody(-100 * u.K) bb(1.0 * u.micron) bb = BlackBody(5000 * u.K) # Zero wavelength given for conversion to Hz with pytest.warns(AstropyUserWarning, match='invalid') as w: bb(0 * u.AA) assert len(w) == 3 # 2 of these are RuntimeWarning from zero divide # Negative wavelength given for conversion to Hz with pytest.warns(AstropyUserWarning, match='invalid') as w: bb(-1.0 * u.AA) assert len(w) == 1 # Test that a non surface brightness convertible scale unit raises an error with pytest.raises( ValueError, match="scale units not dimensionless or in surface brightness: Jy"): bb = BlackBody(5000 * u.K, scale=1.0 * u.Jy) def test_blackbody_array_temperature(): """Regression test to make sure that the temperature can be an array.""" multibb = BlackBody([100, 200, 300] * u.K) flux = multibb(1.2 * u.mm) np.testing.assert_allclose( flux.value, [1.804908e-12, 3.721328e-12, 5.638513e-12], rtol=1e-5 ) flux = multibb([2, 4, 6] * u.mm) np.testing.assert_allclose( flux.value, [6.657915e-13, 3.420677e-13, 2.291897e-13], rtol=1e-5 ) multibb = BlackBody(np.ones(4) * u.K) flux = multibb(np.ones((3, 4)) * u.mm) assert flux.shape == (3, 4) def test_blackbody_dimensionless(): """Test support for dimensionless (but not unscaled) units for scale""" T = 3000 * u.K r = 1e14 * u.cm DL = 100 * u.Mpc scale = np.pi * (r / DL)**2 bb1 = BlackBody(temperature=T, scale=scale) # even though we passed scale with units, we should be able to evaluate with unitless bb1.evaluate(0.5, T.value, scale.to_value(u.dimensionless_unscaled)) bb2 = BlackBody(temperature=T, scale=scale.to_value(u.dimensionless_unscaled)) bb2.evaluate(0.5, T.value, scale.to_value(u.dimensionless_unscaled)) # bolometric flux for both cases should be equivalent assert(bb1.bolometric_flux == bb2.bolometric_flux) @pytest.mark.skipif("not HAS_SCIPY") def test_blackbody_dimensionless_fit(): T = 3000 * u.K r = 1e14 * u.cm DL = 100 * u.Mpc scale = np.pi * (r / DL)**2 bb1 = BlackBody(temperature=T, scale=scale) bb2 = BlackBody(temperature=T, scale=scale.to_value(u.dimensionless_unscaled)) fitter = LevMarLSQFitter() wav = np.array([0.5, 5, 10]) * u.micron fnu = np.array([1, 10, 5]) * u.Jy / u.sr bb1_fit = fitter(bb1, wav, fnu, maxiter=1000) bb2_fit = fitter(bb2, wav, fnu, maxiter=1000) assert(bb1_fit.temperature == bb2_fit.temperature) @pytest.mark.parametrize("mass", (2.0000000000000E15 * u.M_sun, 3.976819741e+45 * u.kg)) def test_NFW_evaluate(mass): """Evaluation, density, and radii validation of NFW model.""" # Test parameters concentration = 8.5 redshift = 0.63 cosmo = cosmology.Planck15 # Parsec tests # 200c Overdensity massfactor = ("critical", 200) n200c = NFW(mass=mass, concentration=concentration, redshift=redshift, cosmo=cosmo, massfactor=massfactor) assert_quantity_allclose(n200c(3.0 * u.Mpc), (3.709693508e+12 * (u.solMass / u.Mpc ** 3), 7.376391187e+42 * (u.kg / u.Mpc ** 3))) assert_quantity_allclose(n200c.rho_scale, (7800150779863018.0 * (u.solMass / u.Mpc ** 3))) assert_quantity_allclose(n200c.r_s, (0.24684627641195428 * u.Mpc)) assert_quantity_allclose(n200c.r_virial, (2.0981933495016114 * u.Mpc)) # 200m Overdensity massfactor = ("mean", 200) n200m = NFW(mass=mass, concentration=concentration, redshift=redshift, cosmo=cosmo, massfactor=massfactor) assert_quantity_allclose(n200m(3.0 * u.Mpc), (3.626093406e+12 * (u.solMass / u.Mpc**3), 7.210159921e+42 * (u.kg / u.Mpc**3))) assert_quantity_allclose(n200m.rho_scale, (5118547639858115.0 * (u.solMass / u.Mpc ** 3))) assert_quantity_allclose(n200m.r_s, (0.2840612517326848 * u.Mpc)) assert_quantity_allclose(n200m.r_virial, (2.414520639727821 * u.Mpc)) # Virial mass massfactor = ("virial") nvir = NFW(mass=mass, concentration=concentration, redshift=redshift, cosmo=cosmo, massfactor=massfactor) assert_quantity_allclose(nvir(3.0 * u.Mpc), (3.646475546e+12 * (u.solMass / u.Mpc**3), 7.250687967e+42 * (u.kg / u.Mpc**3))) assert_quantity_allclose(nvir.rho_scale, (5649367524651067.0 * (u.solMass / u.Mpc ** 3))) assert_quantity_allclose(nvir.r_s, (0.2748701862303786 * u.Mpc)) assert_quantity_allclose(nvir.r_virial, (2.3363965829582183 * u.Mpc)) # kpc tests # 200c Overdensity massfactor = ("critical", 200) n200c = NFW(mass=mass, concentration=concentration, redshift=redshift, cosmo=cosmo, massfactor=massfactor) assert_quantity_allclose(n200c(3141 * u.kpc), (3254.373619264334 * (u.solMass / u.kpc ** 3), 6.471028627484543e+33 * (u.kg / u.kpc ** 3))) assert_quantity_allclose(n200c.rho_scale, (7800150.779863021 * (u.solMass / u.kpc ** 3))) assert_quantity_allclose(n200c.r_s, (246.84627641195425 * u.kpc)) assert_quantity_allclose(n200c.r_virial, (2098.193349501611 * u.kpc)) # 200m Overdensity massfactor = ("mean", 200) n200m = NFW(mass=mass, concentration=concentration, redshift=redshift, cosmo=cosmo, massfactor=massfactor) assert_quantity_allclose(n200m(3141 * u.kpc), (3184.0370866188623 * (u.solMass / u.kpc**3), 6.33117077170161e+33 * (u.kg / u.kpc**3))) assert_quantity_allclose(n200m.rho_scale, (5118547.639858116 * (u.solMass / u.kpc ** 3))) assert_quantity_allclose(n200m.r_s, (284.0612517326848 * u.kpc)) assert_quantity_allclose(n200m.r_virial, (2414.5206397278207 * u.kpc)) # Virial mass massfactor = ("virial") nvir = NFW(mass=mass, concentration=concentration, redshift=redshift, cosmo=cosmo, massfactor=massfactor) assert_quantity_allclose(nvir(3141 * u.kpc), (3201.1946851294997 * (u.solMass / u.kpc**3), 6.365287109937637e+33 * (u.kg / u.kpc**3))) assert_quantity_allclose(nvir.rho_scale, (5649367.5246510655 * (u.solMass / u.kpc ** 3))) assert_quantity_allclose(nvir.r_s, (274.87018623037864 * u.kpc)) assert_quantity_allclose(nvir.r_virial, (2336.3965829582185 * u.kpc)) # Meter tests # 200c Overdensity massfactor = ("critical", 200) n200c = NFW(mass=mass, concentration=concentration, redshift=redshift, cosmo=cosmo, massfactor=massfactor) assert_quantity_allclose(n200c(4.2e+23 * u.m), (1.527649658673012e-57 * (u.solMass / u.m ** 3), 3.0375936602739256e-27 * (u.kg / u.m ** 3))) assert_quantity_allclose(n200c.rho_scale, (2.654919529637763e-52 * (u.solMass / u.m ** 3))) assert_quantity_allclose(n200c.r_s, (7.616880211930209e+21 * u.m)) assert_quantity_allclose(n200c.r_virial, (6.474348180140678e+22 * u.m)) # 200m Overdensity massfactor = ("mean", 200) n200m = NFW(mass=mass, concentration=concentration, redshift=redshift, cosmo=cosmo, massfactor=massfactor) assert_quantity_allclose(n200m(4.2e+23 * u.m), (1.5194778058079436e-57 * (u.solMass / u.m ** 3), 3.0213446673751314e-27 * (u.kg / u.m ** 3))) assert_quantity_allclose(n200m.rho_scale, (1.742188385322371e-52 * (u.solMass / u.m ** 3))) assert_quantity_allclose(n200m.r_s, (8.76521436235054e+21 * u.m)) assert_quantity_allclose(n200m.r_virial, (7.450432207997959e+22 * u.m)) # Virial mass massfactor = ("virial") nvir = NFW(mass=mass, concentration=concentration, redshift=redshift, cosmo=cosmo, massfactor=massfactor) assert_quantity_allclose(nvir(4.2e+23 * u.m), (1.5214899184117633e-57 * (u.solMass / u.m ** 3), 3.0253455719375224e-27 * (u.kg / u.m ** 3))) assert_quantity_allclose(nvir.rho_scale, (1.922862338766335e-52 * (u.solMass / u.m ** 3))) assert_quantity_allclose(nvir.r_s, (8.481607714647913e+21 * u.m)) assert_quantity_allclose(nvir.r_virial, (7.209366557450727e+22 * u.m)) # Verify string input of overdensity type # 200c Overdensity massfactor = "200c" n200c = NFW(mass=mass, concentration=concentration, redshift=redshift, cosmo=cosmo, massfactor=massfactor) assert_quantity_allclose(n200c(3.0 * u.Mpc), (3.709693508e+12 * (u.solMass / u.Mpc ** 3), 7.376391187e+42 * (u.kg / u.Mpc ** 3))) # 200m Overdensity massfactor = "200m" n200m = NFW(mass=mass, concentration=concentration, redshift=redshift, cosmo=cosmo, massfactor=massfactor) assert_quantity_allclose(n200m(3.0 * u.Mpc), (3.626093406e+12 * (u.solMass / u.Mpc**3), 7.210159921e+42 * (u.kg / u.Mpc**3))) # Virial mass massfactor = "virial" nvir = NFW(mass=mass, concentration=concentration, redshift=redshift, cosmo=cosmo, massfactor=massfactor) assert_quantity_allclose(nvir(3.0 * u.Mpc), (3.646475546e+12 * (u.solMass / u.Mpc**3), 7.250687967e+42 * (u.kg / u.Mpc**3))) @pytest.mark.skipif("not HAS_SCIPY") def test_NFW_fit(): """Test linear fitting of NFW model.""" # Fixed parameters redshift = 0.63 cosmo = cosmology.Planck15 # Radial set r = np.array([1.00e+01, 1.00e+02, 2.00e+02, 2.50e+02, 3.00e+02, 4.00e+02, 5.00e+02, 7.50e+02, 1.00e+03, 1.50e+03, 2.50e+03, 6.50e+03, 1.15e+04]) * u.kpc # 200c Overdensity massfactor = ("critical", 200) density_r = np.array([1.77842761e+08, 9.75233623e+06, 2.93789626e+06, 1.90107238e+06, 1.30776878e+06, 7.01004140e+05, 4.20678479e+05, 1.57421880e+05, 7.54669701e+04, 2.56319769e+04, 6.21976562e+03, 3.96522424e+02, 7.39336808e+01]) * (u.solMass / u.kpc ** 3) fitter = LevMarLSQFitter() n200c = NFW(mass=1.8E15 * u.M_sun, concentration=7.0, redshift=redshift, cosmo=cosmo, massfactor=massfactor) n200c.redshift.fixed = True n_fit = fitter(n200c, r, density_r, maxiter=1000) assert_quantity_allclose(n_fit.mass, 2.0000000000000E15 * u.M_sun) assert_quantity_allclose(n_fit.concentration, 8.5) # 200m Overdensity massfactor = ("mean", 200) density_r = np.array([1.35677282e+08, 7.95392979e+06, 2.50352599e+06, 1.64535870e+06, 1.14642248e+06, 6.26805453e+05, 3.81691731e+05, 1.46294819e+05, 7.11559560e+04, 2.45737796e+04, 6.05459585e+03, 3.92183991e+02, 7.34674416e+01]) * (u.solMass / u.kpc ** 3) fitter = LevMarLSQFitter() n200m = NFW(mass=1.8E15 * u.M_sun, concentration=7.0, redshift=redshift, cosmo=cosmo, massfactor=massfactor) n200m.redshift.fixed = True n_fit = fitter(n200m, r, density_r, maxiter=1000) assert_quantity_allclose(n_fit.mass, 2.0000000000000E15 * u.M_sun) assert_quantity_allclose(n_fit.concentration, 8.5) # Virial mass massfactor = ("virial", 200) density_r = np.array([1.44573515e+08, 8.34873998e+06, 2.60137484e+06, 1.70348738e+06, 1.18337370e+06, 6.43994654e+05, 3.90800249e+05, 1.48930537e+05, 7.21856397e+04, 2.48289464e+04, 6.09477095e+03, 3.93248818e+02, 7.35821787e+01]) * (u.solMass / u.kpc ** 3) fitter = LevMarLSQFitter() nvir = NFW(mass=1.8E15 * u.M_sun, concentration=7.0, redshift=redshift, cosmo=cosmo, massfactor=massfactor) nvir.redshift.fixed = True n_fit = fitter(nvir, r, density_r, maxiter=1000) assert_quantity_allclose(n_fit.mass, 2.0000000000000E15 * u.M_sun) assert_quantity_allclose(n_fit.concentration, 8.5) def test_NFW_circular_velocity(): """Test circular velocity and radial validation of NFW model.""" # Test parameters mass = 2.0000000000000E15 * u.M_sun concentration = 8.5 redshift = 0.63 cosmo = cosmology.Planck15 r_r = np.array([0.01, 0.1, 0.2, 0.25, 0.3, 0.4, 0.5, 0.75, 1.0, 1.5, 2.5, 6.5, 11.5]) * u.Mpc # 200c Overdensity tests massfactor = ("critical", 200) n200c = NFW(mass=mass, concentration=concentration, redshift=redshift, cosmo=cosmo, massfactor=massfactor) circ_v_200c = np.array([702.45487454, 1812.4138346, 2150.50929296, 2231.5802568, 2283.96950242, 2338.45989696, 2355.78876772, 2332.41766543, 2276.89433811, 2154.53909153, 1950.07947819, 1512.37442943, 1260.94034541]) * (u.km / u.s) assert_quantity_allclose(n200c.circular_velocity(r_r), circ_v_200c) assert_quantity_allclose(n200c.r_max, (0.5338248204429641 * u.Mpc)) assert_quantity_allclose(n200c.v_max, (2356.7204380904027 * (u.km / u.s))) # 200m Overdensity tests massfactor = ("mean", 200) mass = 1.0e14 * u.M_sun concentration = 12.3 redshift = 1.5 n200m = NFW(mass=mass, concentration=concentration, redshift=redshift, cosmo=cosmo, massfactor=massfactor) circ_v_200m = np.array([670.18236647, 1088.9843324, 1046.82334367, 1016.88890732, 987.97273478, 936.00207134, 891.80115232, 806.63307977, 744.91002191, 659.33401039, 557.82823549, 395.9735786, 318.29863006]) * (u.km / u.s) assert_quantity_allclose(n200m.circular_velocity(r_r), circ_v_200m) assert_quantity_allclose(n200m.r_max, (0.10196917920081808 * u.Mpc)) assert_quantity_allclose(n200m.v_max, (1089.0224395818727 * (u.km / u.s))) # Virial Overdensity tests massfactor = ("virial") mass = 1.2e+45 * u.kg concentration = 2.4 redshift = 0.34 r_r = np.array([3.08567758e+20, 3.08567758e+21, 6.17135516e+21, 7.71419395e+21, 9.25703274e+21, 1.23427103e+22, 1.54283879e+22, 2.31425819e+22, 3.08567758e+22, 4.62851637e+22, 7.71419395e+22, 2.00569043e+23, 3.54852922e+23]) * u.m nvir = NFW(mass=mass, concentration=concentration, redshift=redshift, cosmo=cosmo, massfactor=massfactor) circ_v_vir = np.array([205.87461783, 604.65091823, 793.9190629, 857.52516521, 908.90280843, 986.53582718, 1041.69089845, 1124.19719446, 1164.58270747, 1191.33193561, 1174.02934755, 1023.69360527, 895.52206321]) * (u.km / u.s) assert_quantity_allclose(nvir.circular_velocity(r_r), circ_v_vir) assert_quantity_allclose(nvir.r_max, (1.6484542328623448 * u.Mpc)) assert_quantity_allclose(nvir.v_max, (1192.3130989914962 * (u.km / u.s))) def test_NFW_exceptions_and_warnings_and_misc(): """Test NFW exceptions.""" # Arbitrary Test parameters mass = 2.0000000000000E15 * u.M_sun concentration = 8.5 redshift = 0.63 cosmo = cosmology.Planck15 massfactor = ("critical", 200) r_r = np.array([1.00e+01, 1.00e+02, 2.00e+02, 2.50e+02, 3.00e+02, 4.00e+02, 5.00e+02, 7.50e+02, 1.00e+03, 1.50e+03, 2.50e+03, 6.50e+03, 1.15e+04]) * u.kpc # Massfactor exception tests with pytest.raises(ValueError) as exc: NFW(mass=mass, concentration=concentration, redshift=redshift, cosmo=cosmo, massfactor=("not", "virial")) assert exc.value.args[0] == "Massfactor 'not' not one of 'critical', 'mean', or 'virial'" with pytest.raises(ValueError) as exc: NFW(mass=mass, concentration=concentration, redshift=redshift, cosmo=cosmo, massfactor="not virial") assert exc.value.args[0] == "Massfactor not virial string not of the form '#m', '#c', " \ "or 'virial'" with pytest.raises(TypeError) as exc: NFW(mass=mass, concentration=concentration, redshift=redshift, cosmo=cosmo, massfactor=200) assert exc.value.args[0] == "Massfactor 200 not a tuple or string" # Verify unitless mass # Density test n200c = NFW(mass=mass.value, concentration=concentration, redshift=redshift, cosmo=cosmo, massfactor=massfactor) assert_quantity_allclose(n200c(3000.0), (3.709693508e+12 * (u.solMass / u.Mpc ** 3), 7.376391187e+42 * (u.kg / u.Mpc ** 3))) # Circular velocity test with unitless mass circ_v_200c = np.array([702.45487454, 1812.4138346, 2150.50929296, 2231.5802568, 2283.96950242, 2338.45989696, 2355.78876772, 2332.41766543, 2276.89433811, 2154.53909153, 1950.07947819, 1512.37442943, 1260.94034541]) * (u.km / u.s) assert_quantity_allclose(n200c.circular_velocity(r_r), circ_v_200c) # test with unitless input velocity assert_quantity_allclose(n200c.circular_velocity(r_r.value), circ_v_200c) # Test Default Cosmology ncos = NFW(mass=mass, concentration=concentration, redshift=redshift) assert_quantity_allclose(ncos.A_NFW(concentration), 1.356554956501232)