""" Testing for Multi-layer Perceptron module (sklearn.neural_network) """ # Author: Issam H. Laradji # License: BSD 3 clause import re import sys import warnings from io import StringIO import joblib import numpy as np import pytest from numpy.testing import ( assert_allclose, assert_almost_equal, assert_array_equal, ) from sklearn.datasets import ( load_digits, load_iris, make_multilabel_classification, make_regression, ) from sklearn.exceptions import ConvergenceWarning from sklearn.metrics import roc_auc_score from sklearn.neural_network import MLPClassifier, MLPRegressor from sklearn.preprocessing import LabelBinarizer, MinMaxScaler, scale from sklearn.utils._testing import ignore_warnings from sklearn.utils.fixes import CSR_CONTAINERS ACTIVATION_TYPES = ["identity", "logistic", "tanh", "relu"] X_digits, y_digits = load_digits(n_class=3, return_X_y=True) X_digits_multi = MinMaxScaler().fit_transform(X_digits[:200]) y_digits_multi = y_digits[:200] X_digits, y_digits = load_digits(n_class=2, return_X_y=True) X_digits_binary = MinMaxScaler().fit_transform(X_digits[:200]) y_digits_binary = y_digits[:200] classification_datasets = [ (X_digits_multi, y_digits_multi), (X_digits_binary, y_digits_binary), ] X_reg, y_reg = make_regression( n_samples=200, n_features=10, bias=20.0, noise=100.0, random_state=7 ) y_reg = scale(y_reg) regression_datasets = [(X_reg, y_reg)] iris = load_iris() X_iris = iris.data y_iris = iris.target def test_alpha(): # Test that larger alpha yields weights closer to zero X = X_digits_binary[:100] y = y_digits_binary[:100] alpha_vectors = [] alpha_values = np.arange(2) absolute_sum = lambda x: np.sum(np.abs(x)) for alpha in alpha_values: mlp = MLPClassifier(hidden_layer_sizes=10, alpha=alpha, random_state=1) with ignore_warnings(category=ConvergenceWarning): mlp.fit(X, y) alpha_vectors.append( np.array([absolute_sum(mlp.coefs_[0]), absolute_sum(mlp.coefs_[1])]) ) for i in range(len(alpha_values) - 1): assert (alpha_vectors[i] > alpha_vectors[i + 1]).all() def test_fit(): # Test that the algorithm solution is equal to a worked out example. X = np.array([[0.6, 0.8, 0.7]]) y = np.array([0]) mlp = MLPClassifier( solver="sgd", learning_rate_init=0.1, alpha=0.1, activation="logistic", random_state=1, max_iter=1, hidden_layer_sizes=2, momentum=0, ) # set weights mlp.coefs_ = [0] * 2 mlp.intercepts_ = [0] * 2 mlp.n_outputs_ = 1 mlp.coefs_[0] = np.array([[0.1, 0.2], [0.3, 0.1], [0.5, 0]]) mlp.coefs_[1] = np.array([[0.1], [0.2]]) mlp.intercepts_[0] = np.array([0.1, 0.1]) mlp.intercepts_[1] = np.array([1.0]) mlp._coef_grads = [] * 2 mlp._intercept_grads = [] * 2 mlp.n_features_in_ = 3 # Initialize parameters mlp.n_iter_ = 0 mlp.learning_rate_ = 0.1 # Compute the number of layers mlp.n_layers_ = 3 # Pre-allocate gradient matrices mlp._coef_grads = [0] * (mlp.n_layers_ - 1) mlp._intercept_grads = [0] * (mlp.n_layers_ - 1) mlp.out_activation_ = "logistic" mlp.t_ = 0 mlp.best_loss_ = np.inf mlp.loss_curve_ = [] mlp._no_improvement_count = 0 mlp._intercept_velocity = [ np.zeros_like(intercepts) for intercepts in mlp.intercepts_ ] mlp._coef_velocity = [np.zeros_like(coefs) for coefs in mlp.coefs_] mlp.partial_fit(X, y, classes=[0, 1]) # Manually worked out example # h1 = g(X1 * W_i1 + b11) = g(0.6 * 0.1 + 0.8 * 0.3 + 0.7 * 0.5 + 0.1) # = 0.679178699175393 # h2 = g(X2 * W_i2 + b12) = g(0.6 * 0.2 + 0.8 * 0.1 + 0.7 * 0 + 0.1) # = 0.574442516811659 # o1 = g(h * W2 + b21) = g(0.679 * 0.1 + 0.574 * 0.2 + 1) # = 0.7654329236196236 # d21 = -(0 - 0.765) = 0.765 # d11 = (1 - 0.679) * 0.679 * 0.765 * 0.1 = 0.01667 # d12 = (1 - 0.574) * 0.574 * 0.765 * 0.2 = 0.0374 # W1grad11 = X1 * d11 + alpha * W11 = 0.6 * 0.01667 + 0.1 * 0.1 = 0.0200 # W1grad11 = X1 * d12 + alpha * W12 = 0.6 * 0.0374 + 0.1 * 0.2 = 0.04244 # W1grad21 = X2 * d11 + alpha * W13 = 0.8 * 0.01667 + 0.1 * 0.3 = 0.043336 # W1grad22 = X2 * d12 + alpha * W14 = 0.8 * 0.0374 + 0.1 * 0.1 = 0.03992 # W1grad31 = X3 * d11 + alpha * W15 = 0.6 * 0.01667 + 0.1 * 0.5 = 0.060002 # W1grad32 = X3 * d12 + alpha * W16 = 0.6 * 0.0374 + 0.1 * 0 = 0.02244 # W2grad1 = h1 * d21 + alpha * W21 = 0.679 * 0.765 + 0.1 * 0.1 = 0.5294 # W2grad2 = h2 * d21 + alpha * W22 = 0.574 * 0.765 + 0.1 * 0.2 = 0.45911 # b1grad1 = d11 = 0.01667 # b1grad2 = d12 = 0.0374 # b2grad = d21 = 0.765 # W1 = W1 - eta * [W1grad11, .., W1grad32] = [[0.1, 0.2], [0.3, 0.1], # [0.5, 0]] - 0.1 * [[0.0200, 0.04244], [0.043336, 0.03992], # [0.060002, 0.02244]] = [[0.098, 0.195756], [0.2956664, # 0.096008], [0.4939998, -0.002244]] # W2 = W2 - eta * [W2grad1, W2grad2] = [[0.1], [0.2]] - 0.1 * # [[0.5294], [0.45911]] = [[0.04706], [0.154089]] # b1 = b1 - eta * [b1grad1, b1grad2] = 0.1 - 0.1 * [0.01667, 0.0374] # = [0.098333, 0.09626] # b2 = b2 - eta * b2grad = 1.0 - 0.1 * 0.765 = 0.9235 assert_almost_equal( mlp.coefs_[0], np.array([[0.098, 0.195756], [0.2956664, 0.096008], [0.4939998, -0.002244]]), decimal=3, ) assert_almost_equal(mlp.coefs_[1], np.array([[0.04706], [0.154089]]), decimal=3) assert_almost_equal(mlp.intercepts_[0], np.array([0.098333, 0.09626]), decimal=3) assert_almost_equal(mlp.intercepts_[1], np.array(0.9235), decimal=3) # Testing output # h1 = g(X1 * W_i1 + b11) = g(0.6 * 0.098 + 0.8 * 0.2956664 + # 0.7 * 0.4939998 + 0.098333) = 0.677 # h2 = g(X2 * W_i2 + b12) = g(0.6 * 0.195756 + 0.8 * 0.096008 + # 0.7 * -0.002244 + 0.09626) = 0.572 # o1 = h * W2 + b21 = 0.677 * 0.04706 + # 0.572 * 0.154089 + 0.9235 = 1.043 # prob = sigmoid(o1) = 0.739 assert_almost_equal(mlp.predict_proba(X)[0, 1], 0.739, decimal=3) def test_gradient(): # Test gradient. # This makes sure that the activation functions and their derivatives # are correct. The numerical and analytical computation of the gradient # should be close. for n_labels in [2, 3]: n_samples = 5 n_features = 10 random_state = np.random.RandomState(seed=42) X = random_state.rand(n_samples, n_features) y = 1 + np.mod(np.arange(n_samples) + 1, n_labels) Y = LabelBinarizer().fit_transform(y) for activation in ACTIVATION_TYPES: mlp = MLPClassifier( activation=activation, hidden_layer_sizes=10, solver="lbfgs", alpha=1e-5, learning_rate_init=0.2, max_iter=1, random_state=1, ) mlp.fit(X, y) theta = np.hstack([l.ravel() for l in mlp.coefs_ + mlp.intercepts_]) layer_units = [X.shape[1]] + [mlp.hidden_layer_sizes] + [mlp.n_outputs_] activations = [] deltas = [] coef_grads = [] intercept_grads = [] activations.append(X) for i in range(mlp.n_layers_ - 1): activations.append(np.empty((X.shape[0], layer_units[i + 1]))) deltas.append(np.empty((X.shape[0], layer_units[i + 1]))) fan_in = layer_units[i] fan_out = layer_units[i + 1] coef_grads.append(np.empty((fan_in, fan_out))) intercept_grads.append(np.empty(fan_out)) # analytically compute the gradients def loss_grad_fun(t): return mlp._loss_grad_lbfgs( t, X, Y, activations, deltas, coef_grads, intercept_grads ) [value, grad] = loss_grad_fun(theta) numgrad = np.zeros(np.size(theta)) n = np.size(theta, 0) E = np.eye(n) epsilon = 1e-5 # numerically compute the gradients for i in range(n): dtheta = E[:, i] * epsilon numgrad[i] = ( loss_grad_fun(theta + dtheta)[0] - loss_grad_fun(theta - dtheta)[0] ) / (epsilon * 2.0) assert_almost_equal(numgrad, grad) @pytest.mark.parametrize("X,y", classification_datasets) def test_lbfgs_classification(X, y): # Test lbfgs on classification. # It should achieve a score higher than 0.95 for the binary and multi-class # versions of the digits dataset. X_train = X[:150] y_train = y[:150] X_test = X[150:] expected_shape_dtype = (X_test.shape[0], y_train.dtype.kind) for activation in ACTIVATION_TYPES: mlp = MLPClassifier( solver="lbfgs", hidden_layer_sizes=50, max_iter=150, shuffle=True, random_state=1, activation=activation, ) mlp.fit(X_train, y_train) y_predict = mlp.predict(X_test) assert mlp.score(X_train, y_train) > 0.95 assert (y_predict.shape[0], y_predict.dtype.kind) == expected_shape_dtype @pytest.mark.parametrize("X,y", regression_datasets) def test_lbfgs_regression(X, y): # Test lbfgs on the regression dataset. for activation in ACTIVATION_TYPES: mlp = MLPRegressor( solver="lbfgs", hidden_layer_sizes=50, max_iter=150, shuffle=True, random_state=1, activation=activation, ) mlp.fit(X, y) if activation == "identity": assert mlp.score(X, y) > 0.80 else: # Non linear models perform much better than linear bottleneck: assert mlp.score(X, y) > 0.98 @pytest.mark.parametrize("X,y", classification_datasets) def test_lbfgs_classification_maxfun(X, y): # Test lbfgs parameter max_fun. # It should independently limit the number of iterations for lbfgs. max_fun = 10 # classification tests for activation in ACTIVATION_TYPES: mlp = MLPClassifier( solver="lbfgs", hidden_layer_sizes=50, max_iter=150, max_fun=max_fun, shuffle=True, random_state=1, activation=activation, ) with pytest.warns(ConvergenceWarning): mlp.fit(X, y) assert max_fun >= mlp.n_iter_ @pytest.mark.parametrize("X,y", regression_datasets) def test_lbfgs_regression_maxfun(X, y): # Test lbfgs parameter max_fun. # It should independently limit the number of iterations for lbfgs. max_fun = 10 # regression tests for activation in ACTIVATION_TYPES: mlp = MLPRegressor( solver="lbfgs", hidden_layer_sizes=50, tol=0.0, max_iter=150, max_fun=max_fun, shuffle=True, random_state=1, activation=activation, ) with pytest.warns(ConvergenceWarning): mlp.fit(X, y) assert max_fun >= mlp.n_iter_ def test_learning_rate_warmstart(): # Tests that warm_start reuse past solutions. X = [[3, 2], [1, 6], [5, 6], [-2, -4]] y = [1, 1, 1, 0] for learning_rate in ["invscaling", "constant"]: mlp = MLPClassifier( solver="sgd", hidden_layer_sizes=4, learning_rate=learning_rate, max_iter=1, power_t=0.25, warm_start=True, ) with ignore_warnings(category=ConvergenceWarning): mlp.fit(X, y) prev_eta = mlp._optimizer.learning_rate mlp.fit(X, y) post_eta = mlp._optimizer.learning_rate if learning_rate == "constant": assert prev_eta == post_eta elif learning_rate == "invscaling": assert mlp.learning_rate_init / pow(8 + 1, mlp.power_t) == post_eta def test_multilabel_classification(): # Test that multi-label classification works as expected. # test fit method X, y = make_multilabel_classification( n_samples=50, random_state=0, return_indicator=True ) mlp = MLPClassifier( solver="lbfgs", hidden_layer_sizes=50, alpha=1e-5, max_iter=150, random_state=0, activation="logistic", learning_rate_init=0.2, ) mlp.fit(X, y) assert mlp.score(X, y) > 0.97 # test partial fit method mlp = MLPClassifier( solver="sgd", hidden_layer_sizes=50, max_iter=150, random_state=0, activation="logistic", alpha=1e-5, learning_rate_init=0.2, ) for i in range(100): mlp.partial_fit(X, y, classes=[0, 1, 2, 3, 4]) assert mlp.score(X, y) > 0.9 # Make sure early stopping still work now that splitting is stratified by # default (it is disabled for multilabel classification) mlp = MLPClassifier(early_stopping=True) mlp.fit(X, y).predict(X) def test_multioutput_regression(): # Test that multi-output regression works as expected X, y = make_regression(n_samples=200, n_targets=5) mlp = MLPRegressor( solver="lbfgs", hidden_layer_sizes=50, max_iter=200, random_state=1 ) mlp.fit(X, y) assert mlp.score(X, y) > 0.9 def test_partial_fit_classes_error(): # Tests that passing different classes to partial_fit raises an error X = [[3, 2]] y = [0] clf = MLPClassifier(solver="sgd") clf.partial_fit(X, y, classes=[0, 1]) with pytest.raises(ValueError): clf.partial_fit(X, y, classes=[1, 2]) def test_partial_fit_classification(): # Test partial_fit on classification. # `partial_fit` should yield the same results as 'fit' for binary and # multi-class classification. for X, y in classification_datasets: mlp = MLPClassifier( solver="sgd", max_iter=100, random_state=1, tol=0, alpha=1e-5, learning_rate_init=0.2, ) with ignore_warnings(category=ConvergenceWarning): mlp.fit(X, y) pred1 = mlp.predict(X) mlp = MLPClassifier( solver="sgd", random_state=1, alpha=1e-5, learning_rate_init=0.2 ) for i in range(100): mlp.partial_fit(X, y, classes=np.unique(y)) pred2 = mlp.predict(X) assert_array_equal(pred1, pred2) assert mlp.score(X, y) > 0.95 def test_partial_fit_unseen_classes(): # Non regression test for bug 6994 # Tests for labeling errors in partial fit clf = MLPClassifier(random_state=0) clf.partial_fit([[1], [2], [3]], ["a", "b", "c"], classes=["a", "b", "c", "d"]) clf.partial_fit([[4]], ["d"]) assert clf.score([[1], [2], [3], [4]], ["a", "b", "c", "d"]) > 0 def test_partial_fit_regression(): # Test partial_fit on regression. # `partial_fit` should yield the same results as 'fit' for regression. X = X_reg y = y_reg for momentum in [0, 0.9]: mlp = MLPRegressor( solver="sgd", max_iter=100, activation="relu", random_state=1, learning_rate_init=0.01, batch_size=X.shape[0], momentum=momentum, ) with warnings.catch_warnings(record=True): # catch convergence warning mlp.fit(X, y) pred1 = mlp.predict(X) mlp = MLPRegressor( solver="sgd", activation="relu", learning_rate_init=0.01, random_state=1, batch_size=X.shape[0], momentum=momentum, ) for i in range(100): mlp.partial_fit(X, y) pred2 = mlp.predict(X) assert_allclose(pred1, pred2) score = mlp.score(X, y) assert score > 0.65 def test_partial_fit_errors(): # Test partial_fit error handling. X = [[3, 2], [1, 6]] y = [1, 0] # no classes passed with pytest.raises(ValueError): MLPClassifier(solver="sgd").partial_fit(X, y, classes=[2]) # lbfgs doesn't support partial_fit assert not hasattr(MLPClassifier(solver="lbfgs"), "partial_fit") def test_nonfinite_params(): # Check that MLPRegressor throws ValueError when dealing with non-finite # parameter values rng = np.random.RandomState(0) n_samples = 10 fmax = np.finfo(np.float64).max X = fmax * rng.uniform(size=(n_samples, 2)) y = rng.standard_normal(size=n_samples) clf = MLPRegressor() msg = ( "Solver produced non-finite parameter weights. The input data may contain large" " values and need to be preprocessed." ) with pytest.raises(ValueError, match=msg): clf.fit(X, y) def test_predict_proba_binary(): # Test that predict_proba works as expected for binary class. X = X_digits_binary[:50] y = y_digits_binary[:50] clf = MLPClassifier(hidden_layer_sizes=5, activation="logistic", random_state=1) with ignore_warnings(category=ConvergenceWarning): clf.fit(X, y) y_proba = clf.predict_proba(X) y_log_proba = clf.predict_log_proba(X) (n_samples, n_classes) = y.shape[0], 2 proba_max = y_proba.argmax(axis=1) proba_log_max = y_log_proba.argmax(axis=1) assert y_proba.shape == (n_samples, n_classes) assert_array_equal(proba_max, proba_log_max) assert_allclose(y_log_proba, np.log(y_proba)) assert roc_auc_score(y, y_proba[:, 1]) == 1.0 def test_predict_proba_multiclass(): # Test that predict_proba works as expected for multi class. X = X_digits_multi[:10] y = y_digits_multi[:10] clf = MLPClassifier(hidden_layer_sizes=5) with ignore_warnings(category=ConvergenceWarning): clf.fit(X, y) y_proba = clf.predict_proba(X) y_log_proba = clf.predict_log_proba(X) (n_samples, n_classes) = y.shape[0], np.unique(y).size proba_max = y_proba.argmax(axis=1) proba_log_max = y_log_proba.argmax(axis=1) assert y_proba.shape == (n_samples, n_classes) assert_array_equal(proba_max, proba_log_max) assert_allclose(y_log_proba, np.log(y_proba)) def test_predict_proba_multilabel(): # Test that predict_proba works as expected for multilabel. # Multilabel should not use softmax which makes probabilities sum to 1 X, Y = make_multilabel_classification( n_samples=50, random_state=0, return_indicator=True ) n_samples, n_classes = Y.shape clf = MLPClassifier(solver="lbfgs", hidden_layer_sizes=30, random_state=0) clf.fit(X, Y) y_proba = clf.predict_proba(X) assert y_proba.shape == (n_samples, n_classes) assert_array_equal(y_proba > 0.5, Y) y_log_proba = clf.predict_log_proba(X) proba_max = y_proba.argmax(axis=1) proba_log_max = y_log_proba.argmax(axis=1) assert (y_proba.sum(1) - 1).dot(y_proba.sum(1) - 1) > 1e-10 assert_array_equal(proba_max, proba_log_max) assert_allclose(y_log_proba, np.log(y_proba)) def test_shuffle(): # Test that the shuffle parameter affects the training process (it should) X, y = make_regression(n_samples=50, n_features=5, n_targets=1, random_state=0) # The coefficients will be identical if both do or do not shuffle for shuffle in [True, False]: mlp1 = MLPRegressor( hidden_layer_sizes=1, max_iter=1, batch_size=1, random_state=0, shuffle=shuffle, ) mlp2 = MLPRegressor( hidden_layer_sizes=1, max_iter=1, batch_size=1, random_state=0, shuffle=shuffle, ) mlp1.fit(X, y) mlp2.fit(X, y) assert np.array_equal(mlp1.coefs_[0], mlp2.coefs_[0]) # The coefficients will be slightly different if shuffle=True mlp1 = MLPRegressor( hidden_layer_sizes=1, max_iter=1, batch_size=1, random_state=0, shuffle=True ) mlp2 = MLPRegressor( hidden_layer_sizes=1, max_iter=1, batch_size=1, random_state=0, shuffle=False ) mlp1.fit(X, y) mlp2.fit(X, y) assert not np.array_equal(mlp1.coefs_[0], mlp2.coefs_[0]) @pytest.mark.parametrize("csr_container", CSR_CONTAINERS) def test_sparse_matrices(csr_container): # Test that sparse and dense input matrices output the same results. X = X_digits_binary[:50] y = y_digits_binary[:50] X_sparse = csr_container(X) mlp = MLPClassifier(solver="lbfgs", hidden_layer_sizes=15, random_state=1) mlp.fit(X, y) pred1 = mlp.predict(X) mlp.fit(X_sparse, y) pred2 = mlp.predict(X_sparse) assert_almost_equal(pred1, pred2) pred1 = mlp.predict(X) pred2 = mlp.predict(X_sparse) assert_array_equal(pred1, pred2) def test_tolerance(): # Test tolerance. # It should force the solver to exit the loop when it converges. X = [[3, 2], [1, 6]] y = [1, 0] clf = MLPClassifier(tol=0.5, max_iter=3000, solver="sgd") clf.fit(X, y) assert clf.max_iter > clf.n_iter_ def test_verbose_sgd(): # Test verbose. X = [[3, 2], [1, 6]] y = [1, 0] clf = MLPClassifier(solver="sgd", max_iter=2, verbose=10, hidden_layer_sizes=2) old_stdout = sys.stdout sys.stdout = output = StringIO() with ignore_warnings(category=ConvergenceWarning): clf.fit(X, y) clf.partial_fit(X, y) sys.stdout = old_stdout assert "Iteration" in output.getvalue() @pytest.mark.parametrize("MLPEstimator", [MLPClassifier, MLPRegressor]) def test_early_stopping(MLPEstimator): X = X_digits_binary[:100] y = y_digits_binary[:100] tol = 0.2 mlp_estimator = MLPEstimator( tol=tol, max_iter=3000, solver="sgd", early_stopping=True ) mlp_estimator.fit(X, y) assert mlp_estimator.max_iter > mlp_estimator.n_iter_ assert mlp_estimator.best_loss_ is None assert isinstance(mlp_estimator.validation_scores_, list) valid_scores = mlp_estimator.validation_scores_ best_valid_score = mlp_estimator.best_validation_score_ assert max(valid_scores) == best_valid_score assert best_valid_score + tol > valid_scores[-2] assert best_valid_score + tol > valid_scores[-1] # check that the attributes `validation_scores_` and `best_validation_score_` # are set to None when `early_stopping=False` mlp_estimator = MLPEstimator( tol=tol, max_iter=3000, solver="sgd", early_stopping=False ) mlp_estimator.fit(X, y) assert mlp_estimator.validation_scores_ is None assert mlp_estimator.best_validation_score_ is None assert mlp_estimator.best_loss_ is not None def test_adaptive_learning_rate(): X = [[3, 2], [1, 6]] y = [1, 0] clf = MLPClassifier(tol=0.5, max_iter=3000, solver="sgd", learning_rate="adaptive") clf.fit(X, y) assert clf.max_iter > clf.n_iter_ assert 1e-6 > clf._optimizer.learning_rate @ignore_warnings(category=RuntimeWarning) def test_warm_start(): X = X_iris y = y_iris y_2classes = np.array([0] * 75 + [1] * 75) y_3classes = np.array([0] * 40 + [1] * 40 + [2] * 70) y_3classes_alt = np.array([0] * 50 + [1] * 50 + [3] * 50) y_4classes = np.array([0] * 37 + [1] * 37 + [2] * 38 + [3] * 38) y_5classes = np.array([0] * 30 + [1] * 30 + [2] * 30 + [3] * 30 + [4] * 30) # No error raised clf = MLPClassifier(hidden_layer_sizes=2, solver="lbfgs", warm_start=True).fit(X, y) clf.fit(X, y) clf.fit(X, y_3classes) for y_i in (y_2classes, y_3classes_alt, y_4classes, y_5classes): clf = MLPClassifier(hidden_layer_sizes=2, solver="lbfgs", warm_start=True).fit( X, y ) message = ( "warm_start can only be used where `y` has the same " "classes as in the previous call to fit." " Previously got [0 1 2], `y` has %s" % np.unique(y_i) ) with pytest.raises(ValueError, match=re.escape(message)): clf.fit(X, y_i) @pytest.mark.parametrize("MLPEstimator", [MLPClassifier, MLPRegressor]) def test_warm_start_full_iteration(MLPEstimator): # Non-regression test for: # https://github.com/scikit-learn/scikit-learn/issues/16812 # Check that the MLP estimator accomplish `max_iter` with a # warm started estimator. X, y = X_iris, y_iris max_iter = 3 clf = MLPEstimator( hidden_layer_sizes=2, solver="sgd", warm_start=True, max_iter=max_iter ) clf.fit(X, y) assert max_iter == clf.n_iter_ clf.fit(X, y) assert max_iter == clf.n_iter_ def test_n_iter_no_change(): # test n_iter_no_change using binary data set # the classifying fitting process is not prone to loss curve fluctuations X = X_digits_binary[:100] y = y_digits_binary[:100] tol = 0.01 max_iter = 3000 # test multiple n_iter_no_change for n_iter_no_change in [2, 5, 10, 50, 100]: clf = MLPClassifier( tol=tol, max_iter=max_iter, solver="sgd", n_iter_no_change=n_iter_no_change ) clf.fit(X, y) # validate n_iter_no_change assert clf._no_improvement_count == n_iter_no_change + 1 assert max_iter > clf.n_iter_ @ignore_warnings(category=ConvergenceWarning) def test_n_iter_no_change_inf(): # test n_iter_no_change using binary data set # the fitting process should go to max_iter iterations X = X_digits_binary[:100] y = y_digits_binary[:100] # set a ridiculous tolerance # this should always trigger _update_no_improvement_count() tol = 1e9 # fit n_iter_no_change = np.inf max_iter = 3000 clf = MLPClassifier( tol=tol, max_iter=max_iter, solver="sgd", n_iter_no_change=n_iter_no_change ) clf.fit(X, y) # validate n_iter_no_change doesn't cause early stopping assert clf.n_iter_ == max_iter # validate _update_no_improvement_count() was always triggered assert clf._no_improvement_count == clf.n_iter_ - 1 def test_early_stopping_stratified(): # Make sure data splitting for early stopping is stratified X = [[1, 2], [2, 3], [3, 4], [4, 5]] y = [0, 0, 0, 1] mlp = MLPClassifier(early_stopping=True) with pytest.raises( ValueError, match="The least populated class in y has only 1 member" ): mlp.fit(X, y) def test_mlp_classifier_dtypes_casting(): # Compare predictions for different dtypes mlp_64 = MLPClassifier( alpha=1e-5, hidden_layer_sizes=(5, 3), random_state=1, max_iter=50 ) mlp_64.fit(X_digits[:300], y_digits[:300]) pred_64 = mlp_64.predict(X_digits[300:]) proba_64 = mlp_64.predict_proba(X_digits[300:]) mlp_32 = MLPClassifier( alpha=1e-5, hidden_layer_sizes=(5, 3), random_state=1, max_iter=50 ) mlp_32.fit(X_digits[:300].astype(np.float32), y_digits[:300]) pred_32 = mlp_32.predict(X_digits[300:].astype(np.float32)) proba_32 = mlp_32.predict_proba(X_digits[300:].astype(np.float32)) assert_array_equal(pred_64, pred_32) assert_allclose(proba_64, proba_32, rtol=1e-02) def test_mlp_regressor_dtypes_casting(): mlp_64 = MLPRegressor( alpha=1e-5, hidden_layer_sizes=(5, 3), random_state=1, max_iter=50 ) mlp_64.fit(X_digits[:300], y_digits[:300]) pred_64 = mlp_64.predict(X_digits[300:]) mlp_32 = MLPRegressor( alpha=1e-5, hidden_layer_sizes=(5, 3), random_state=1, max_iter=50 ) mlp_32.fit(X_digits[:300].astype(np.float32), y_digits[:300]) pred_32 = mlp_32.predict(X_digits[300:].astype(np.float32)) assert_allclose(pred_64, pred_32, rtol=1e-04) @pytest.mark.parametrize("dtype", [np.float32, np.float64]) @pytest.mark.parametrize("Estimator", [MLPClassifier, MLPRegressor]) def test_mlp_param_dtypes(dtype, Estimator): # Checks if input dtype is used for network parameters # and predictions X, y = X_digits.astype(dtype), y_digits mlp = Estimator(alpha=1e-5, hidden_layer_sizes=(5, 3), random_state=1, max_iter=50) mlp.fit(X[:300], y[:300]) pred = mlp.predict(X[300:]) assert all([intercept.dtype == dtype for intercept in mlp.intercepts_]) assert all([coef.dtype == dtype for coef in mlp.coefs_]) if Estimator == MLPRegressor: assert pred.dtype == dtype def test_mlp_loading_from_joblib_partial_fit(tmp_path): """Loading from MLP and partial fitting updates weights. Non-regression test for #19626.""" pre_trained_estimator = MLPRegressor( hidden_layer_sizes=(42,), random_state=42, learning_rate_init=0.01, max_iter=200 ) features, target = [[2]], [4] # Fit on x=2, y=4 pre_trained_estimator.fit(features, target) # dump and load model pickled_file = tmp_path / "mlp.pkl" joblib.dump(pre_trained_estimator, pickled_file) load_estimator = joblib.load(pickled_file) # Train for a more epochs on point x=2, y=1 fine_tune_features, fine_tune_target = [[2]], [1] for _ in range(200): load_estimator.partial_fit(fine_tune_features, fine_tune_target) # finetuned model learned the new target predicted_value = load_estimator.predict(fine_tune_features) assert_allclose(predicted_value, fine_tune_target, rtol=1e-4) @pytest.mark.parametrize("Estimator", [MLPClassifier, MLPRegressor]) def test_preserve_feature_names(Estimator): """Check that feature names are preserved when early stopping is enabled. Feature names are required for consistency checks during scoring. Non-regression test for gh-24846 """ pd = pytest.importorskip("pandas") rng = np.random.RandomState(0) X = pd.DataFrame(data=rng.randn(10, 2), columns=["colname_a", "colname_b"]) y = pd.Series(data=np.full(10, 1), name="colname_y") model = Estimator(early_stopping=True, validation_fraction=0.2) with warnings.catch_warnings(): warnings.simplefilter("error", UserWarning) model.fit(X, y) @pytest.mark.parametrize("MLPEstimator", [MLPClassifier, MLPRegressor]) def test_mlp_warm_start_with_early_stopping(MLPEstimator): """Check that early stopping works with warm start.""" mlp = MLPEstimator( max_iter=10, random_state=0, warm_start=True, early_stopping=True ) mlp.fit(X_iris, y_iris) n_validation_scores = len(mlp.validation_scores_) mlp.set_params(max_iter=20) mlp.fit(X_iris, y_iris) assert len(mlp.validation_scores_) > n_validation_scores @pytest.mark.parametrize("MLPEstimator", [MLPClassifier, MLPRegressor]) @pytest.mark.parametrize("solver", ["sgd", "adam", "lbfgs"]) def test_mlp_warm_start_no_convergence(MLPEstimator, solver): """Check that we stop the number of iteration at `max_iter` when warm starting. Non-regression test for: https://github.com/scikit-learn/scikit-learn/issues/24764 """ model = MLPEstimator( solver=solver, warm_start=True, early_stopping=False, max_iter=10, n_iter_no_change=np.inf, random_state=0, ) with pytest.warns(ConvergenceWarning): model.fit(X_iris, y_iris) assert model.n_iter_ == 10 model.set_params(max_iter=20) with pytest.warns(ConvergenceWarning): model.fit(X_iris, y_iris) assert model.n_iter_ == 20 @pytest.mark.parametrize("MLPEstimator", [MLPClassifier, MLPRegressor]) def test_mlp_partial_fit_after_fit(MLPEstimator): """Check partial fit does not fail after fit when early_stopping=True. Non-regression test for gh-25693. """ mlp = MLPEstimator(early_stopping=True, random_state=0).fit(X_iris, y_iris) msg = "partial_fit does not support early_stopping=True" with pytest.raises(ValueError, match=msg): mlp.partial_fit(X_iris, y_iris)